KIAS Workshop on Protein NMR Structure Analysis

 

 

 

June 17 ~ 18, 2019             Rm. 8101, KIAS, Seoul

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KIAS Workshop on Protein NMR Structure Analysis

 

 

Mon Jun 17

KIAS Workshop on Protein NMR Structure Analysis Session I

 

13:00 - 15:00 Intro and Lecture on NMR Assignments - Montelione

Intro to Principles of Protein Structure Analysis by NMR; Processing NMR Spectra; Peak Picking NMR Spectra; Automated Backbone Assignment with AutoAssign; Automated Backbone Assignment with PINE; Sidechain Resonance Assignments

 

15:00 - 16:00 Install CABM NMR Lab Software Package on Laptops - Tejero

 

16:00 – 18:00 Practical on NMR Data Analysis - Montelione and Tejero

Processing with NMRPipe; Automated Assignment with AutoAssign and PINE

 

 

Tues Jun 18

 

KIAS Workshop on Protein NMR Structure Analysis Session II

 

8:30 Install CABM NMR Lab Software Package on Laptops - Tejero

 

9:00 Lecture on Structure Determination Methods - Montelione

NMR Restraint Data: NOE, RDC, PRE

CYANA, AutoStructure (ASDP), CNS

Rosetta-NMR, PyMol

 

10:30 - 13:00 Practical on Structure Determination - Tejero

Structure Determination Using ASDP

Visualization with PyMol

Structure Refinement with CNS

 

13:00 Lunch Break

 

KIAS Workshop on Protein NMR Structure Analysis Session III

 

13:00 - 15:00 PM Continue with Structure Determination - Tejero

 

15:00 - 16:00 PM Lecture on Structure Validation Montelione

Restraint Satisfaction, NEF Restraint Format, PDBStat, MolProbity,

Protein Structure Validation Suite (PSVS), wwPDB NMR VTF Report

 

16:00 – 18:00 Practical on Structure Validation - Montelione and Tejero

PDBStat, PSVS