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KIAS Workshop on Protein NMR Structure Analysis
Mon Jun 17
KIAS Workshop on Protein NMR Structure Analysis Session I
13:00 - 15:00 Intro and Lecture on NMR Assignments - Montelione
Intro to Principles of Protein Structure Analysis by NMR; Processing NMR Spectra; Peak Picking NMR Spectra; Automated Backbone Assignment with AutoAssign; Automated Backbone Assignment with PINE; Sidechain Resonance Assignments
15:00 - 16:00 Install CABM NMR Lab Software Package on Laptops - Tejero
16:00 – 18:00 Practical on NMR Data Analysis - Montelione and Tejero
Processing with NMRPipe; Automated Assignment with AutoAssign and PINE
Tues Jun 18
KIAS Workshop on Protein NMR Structure Analysis Session II
8:30 Install CABM NMR Lab Software Package on Laptops - Tejero
9:00 Lecture on Structure Determination Methods - Montelione
NMR Restraint Data: NOE, RDC, PRE
CYANA, AutoStructure (ASDP), CNS
Rosetta-NMR, PyMol
10:30 - 13:00 Practical on Structure Determination - Tejero
Structure Determination Using ASDP
Visualization with PyMol
Structure Refinement with CNS
13:00 Lunch Break
KIAS Workshop on Protein NMR Structure Analysis Session III
13:00 - 15:00 PM Continue with Structure Determination - Tejero
15:00 - 16:00 PM Lecture on Structure Validation Montelione
Restraint Satisfaction, NEF Restraint Format, PDBStat, MolProbity,
Protein Structure Validation Suite (PSVS), wwPDB NMR VTF Report
16:00 – 18:00 Practical on Structure Validation - Montelione and Tejero
PDBStat, PSVS